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Lets remember to keep science, a process, distinct from "prevailing notions of the day". Id actually be in support of using "the scientific method in place of "science" most of the time. Anyways...
Lets use celestial orbits as an example
The prevailing notion of the day at one time was that all celestial bodies followed an earth-centric orbit. The scientific method was not wrong about that. The observers were. Their tools for observation at the time led to incorrect conclusions, but the method itself, being a process, never stopped. Over time, as the observers grew more and more capable, previous conclusions were scrapped. Thats the process at its best.
In fact, i would say that incorrect conclusions are a natural byproduct of evolving methods of observation, and are 100% unavoidable. Humanity just has a tendency to fill in blanks using prevailing social/spiritual ideas.
So yes, many practitioners of the method have been wrong about many things. It will happen forever, and i wouldnt ever use that natural occurance as an excuse to just say "well thwy got that wrong lets just scrap all their ideas". Allowing ancient observers the freedom to be wrong about some things while being right, or at least on the right track, about others is not only ok, but necessary. It just gets problematic when every modern phenomena is tied to ancient ideas that were not fully fleshed out, or even able to be fleshed put in thwir own times.
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